Portfolio item number 1
Short description of portfolio item number 1
Posts by Collection
portfolio
Portfolio item number 2
Short description of portfolio item number 2
publications
Paper Title Number 1
Published in Journal 1, 2009
This paper is about the number 1. The number 2 is left for future work.
Recommended citation: Your Name, You. (2009). "Paper Title Number 1." Journal 1. 1(1). http://academicpages.github.io/files/paper1.pdf
Paper Title Number 2
Published in Journal 1, 2010
This paper is about the number 2. The number 3 is left for future work.
Recommended citation: Your Name, You. (2010). "Paper Title Number 2." Journal 1. 1(2). http://academicpages.github.io/files/paper2.pdf
Paper Title Number 3
Published in Journal 1, 2015
This paper is about the number 3. The number 4 is left for future work.
Recommended citation: Your Name, You. (2015). "Paper Title Number 3." Journal 1. 1(3). http://academicpages.github.io/files/paper3.pdf
research
talks
De novo assembly of viral quasispecies using overlap graphs
Published:
My first presentation at a major conference, awarded with a Best Talk Award! Recording available here.
Full-length de novo viral quasispecies assembly through variation graph construction
Published:
Presenting our first results with Virus-VG at RECOMB-Seq in Paris.
De novo viral quasispecies assembly using overlap graphs
Published:
Our paper on de novo viral quasispecies assembly with SAVAGE was selected for a highlight presentation at RECOMB 2018!
Strain-aware assembly of genomes from mixed samples using flow variation graphs
Published:
My first conference presentation through Zoom… check it out here.
A reference-free solution to the viral quasispecies assembly problem
Published:
Honorary lecture after receiving the BioSB Young Investigator Award!
Virus pangenomics
Published:
A lovely experience, lecturing at the Lake Como School of Advance Studies as part of a PhD Summer School in Pangenomics.
AmpliDiff: an Optimized Amplicon Sequencing Approach to Estimating Lineage Abundances in Viral Metagenomes
Published:
Presenting our first results with AmpliDiff, great algorithmic work by Jasper van Bemmelen.
Graph-based algorithms for viral lineage quantification: a wastewater story
Published:
A keynote lecture at the International Genome Graphs Symposium, where I presented several graph-based methods for wastewater analysis. Five days of genome graphs, what more could you wish for?!
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.